Mass spectra alignments and their significance
نویسندگان
چکیده
منابع مشابه
Mass Spectra Alignments and Their Significance
Mass Spectrometry has become one of the most popular analysis techniques in Genomics and Systems Biology. We investigate a general framework that allows the alignment (or matching) of any two mass spectra. In particular, we examine the alignment of a reference mass spectrum generated in silico from a database, with a measured sample mass spectrum. In this context, we assess the significance of ...
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The 70 ev positive and negative ion mass spectra of ring-substituted nitrobenzenes were studied. The influence of the substituent group on the fragmentation modes of the molecular ions is discussed. The effect of pressure in the formation of negative ions was also studied. As expected, the ratio of fragment ions to negative molecular ions decreased with increasing pressure in ion source.
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Statistical significance of a local sequence alignment depends not only on the similarity score and on the sequence lengths, but also on a length of the alignment. Dependence of the alignment significance on the length of the sequences has been analyzed earlier, and is based on the idea that the longer sequences have more chances to share a local similarity with a bigger score. To the best of o...
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Algorithms that compare two proteins or DNA sequences and produce an alignment of the best matching segments are widely used in molecular biology. These algorithms produce scores that when comparing random sequences of length n grow proportional to n or to log(n) depending on the algorithm parameters. The Azuma-Hoeffding inequality gives an upper bound on the probability of large deviations of ...
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ژورنال
عنوان ژورنال: Journal of Discrete Algorithms
سال: 2007
ISSN: 1570-8667
DOI: 10.1016/j.jda.2006.11.003